PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 799aa    MW: 85224.1 Da    PI: 6.1717
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.9e-06570592225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k ++C +far G C  Gd C++ H
  LPERR01G17280.1 570 KSKPCTHFAR-GSCLKGDDCPYDH 592
                      6789******.************* PP

2zf-CCCH30.75.3e-10598619526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f+++G C +Gd+CkF+H+
  LPERR01G17280.1 598 PCHNFMENGMCIRGDKCKFSHV 619
                      7********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.845539566IPR000571Zinc finger, CCCH-type
SMARTSM003560.013540565IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5540564IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4567593IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5568594IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281568595IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5570593IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021596620IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6597624IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-7598619IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249598621IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4598618IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MVLYKQATPF YSASCSKGPI TCSIEFVFVL TLQKIYSGLS QNKAVIYSGL VGSGPRTPVC  60
RLSFPPLRWV FLFLLSSRRP VAAAADEHPR RDHAPLGTLN PNPNPDTSAP FAMEEPSLAP  120
PRDPLAAAPS AALSRRRAHL DSASYRALSR LFSHCLHLHP PPHAARSDAD GERAAAAITP  180
PGGSGGLPSG GSPPPKDLVC DGGKDLEVEV ALGNPTPHET PSASVSPDAA ANPNTDPGVA  240
PEGTPESGVA GVERVESVEE VVLAGSTSGK DGADGEELGA GSGLMGDDEA LRSMQACLDG  300
DNNELVSEIV GNDDEQLQLD AMMTNLSGRI DDASAGLMSA QSGGASGGKL QDDGRVAEEV  360
KELGAGIGYD RSVVSSDHGS IDGCFEEGEI EGDMQNLDAD DSGNSEHEGE DVAGEELEQD  420
FVSRRKGENE SCGQVIKSHS LHLIPQKGNG DFALNKQCDS NDGSQMHVAR AQAVSYDEVV  480
DWNETPLPDD KALKQGNKRK RAFTEERKAK KTKNKRIKRA LQREAEGVKR LKLQPVIKPK  540
VVQDCRFYLL GKCQQGNMCK FSHDSTPLTK SKPCTHFARG SCLKGDDCPY DHELSKYPCH  600
NFMENGMCIR GDKCKFSHVT PTAEAPSTVD AKNSNASSVP EKTNCREQPS SQKISTVYSG  660
EPTSAPTKHH SILKNLAGLS GNAQKIPVHV PKGIQFLPFN KASVCIPKSI LHRDVVSTEK  720
HKEPSGSQGE NIANHNGLHS APLLDEKNTS KQANLHPCSE PKKYSLPTTA VVVPSSASTQ  780
HEVSEASRIL QEFLFGAGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622402.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_015622403.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A0D9V2570.0A0A0D9V257_9ORYZ; Uncharacterized protein
STRINGBGIOSGA003802-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.22e-06C3H family protein